M.G. Ford, T. Weimar, T. Kohli, R.J. Woods. 2005. Molecular dynamics simulations of galectin-1 -- Oligosaccharide complexes reveal the molecular basis for ligand diversity. In press. : -.

F. Corzana, M.S. Motawia, C.H. Du Penhoat, S. Perz, S.M. Tschampel, R.J. Woods, S.B. Engelsen. 2004. A Hydration study of (1->4) and (1->6) linked alpha-glucans by comparative 10 ns molecular dynamics simulations and 500-MHz NMR.. Journal of Computational Chemistry 25 (4): 573-586.

S.M. Tschampel, R.J. Woods. 2003. Quantifying the role of water in protein-carbohydrate interactions. Journal of Physical Chemistry 107 (43): 9175-9181.

W. Tempel, S. Tschampel, R.J. Woods. 2002. The xenograft antigen bound to Griffonia simplicifolia isolectin 1B4: X-ray crystal structure of the complex and molecular dynamics characterization of the binding site. J. Biol. Chem. 277: 6615-6621.

R. Bukowski, L.C. Morris, R.J. Woods, T. Weimar. 2001. Synthesis and conformational analysis of the T-antigen disaccharide b-D-Gal-(1->3)-b-D-GalNAc-Ome). Eur. J. Org. Chem. : 2697-2705.

K.N. Kirschner, R.J. Woods. 2001. A quantum mechanical study of the non-bonded forces in water-methanol complexes. J. Phys. Chem. A 105: 4150-4155.

C. Clarke, R.J. Woods, A. Cooper, M.A. Nutley, G.-J. Boons. 2001. The involvement of water in carbohydrate-protein binding. J. Am. Chem. Soc. 123: 12238-12247.

M. Basma, S. Sundara, D. Calgan, T. Varnali, R.J. Woods. 2001. Solvated ensemble averaging in the calculation of partial atomic charges. J. Comput. Chem. 22: 1125-1137.

K. Kirschner, R.J. Woods. 2001. Solvent interactions determine carbohydrate conformation. Proc. Natl. Acad. Sci. USA 98: 10541-10545.

W. Tempel, L.A. Lipscomb, J.P. Rose, R.J. Woods. 2001. The xenograft antigen in complex with a GS-1B4 lectin: crystallization and preliminary X-ray analysis. Acta Crystallog. Section D. D57: 1639-1642.

A. Pathiaseril, R.J. Woods. 2000. Relative energies of binding for antibody carbohydrate-antigen complexes computed from free energy simulations. J. Am. Chem. Soc. 122: 331-338.

R.J. Woods, R. Chappelle. 2000. RESP-partial charges for condensed phase MD simulations. J. Mol. Struct. (THEOCHEM). 527: 149-156.

R.J. Woods. 1998. Computational carbohydrate chemistry: what theoretical methods can tell us. Glycoconj. J. 15: 209-216.

R.J. Woods, A. Pathiaseril, M.R. Wormald, C.J. Edge, R.A. Dwek. 1998. The high degree of internal flexibility observed for an oligomannose oligosaccharide does not alter the overall topology of the molecule. Eur. J. Biochem. 258: 372-386.

J.-R. Brisson, S. Uhrinova, R.J. Woods, M. Van der Zwan, H.C. Jarrell, L.C. Paoletti, D.L. Kasper, H.J. Jennings. 1997. NMR and molecular dynamics studies of the conformational epitope of the type-III group-B Streptococcus capsular polysaccharide and derivatives. Biochemistry 36: 3278-3292.

P.M. Rudd, R.J. Woods, M.R. Wormald, G. Opdenakker, A.K. Downing, I.D. Campbell, R.A. Dwek. 1995. The effects of variable glycosylation on the functional activities of ribonuclease, plasminogen and tissue plasminogen activator. Biochem. Biophys. Acta 1248: 1-10.

R.J. Woods. 1995. 3-Dimensional structures of oligosaccharides. Curr. Opin. Struct. Biol. 5: 591-598.

R.J. Woods, R.A. Dwek, C.J. Edge, B. Fraser-Reid. 1995. Molecular mechanical and molecular dynamical simulations of glycoproteins and oligosaccharides. 1. GLYCAM_93 parameter development. J. Phys. Chem. 99: 3832-3846.

Book Chapters

R.J. Woods. 1998. Carbohydrate force fields. In: Encyclopedia of Computational Chemistry(P.V.R. Schleyer, N.L. Allinger, T. Clark, J. Gasteiger, P.A. Kollman, H.F. Schaefer III, P.R. Schreiner, eds.), Vol.Vol. 1:220-233. Chichester: John Wiley & Sons..

R.J. Woods. 1996. The application of molecular modeling techniques to the determination of oligosaccharide solution conformations. In: Reviews in Computational Chemistry, Vol. 9 (K. Lipkowitz and D.B. Boyd, eds.), pp. 129-165. VCH Publishers, New York.